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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yapHAutotrans_barl: outer membrane autotransporter barrel domain protein; [MU] COG3468 Type V secretory pathway, adhesin AidA. (2362 aa)    
Predicted Functional Partners:
prn
Autotrans_barl: outer membrane autotransporter barrel domain protein; [MU] COG3468 Type V secretory pathway, adhesin AidA.
  
   
 0.687
CH54_2380
Hypothetical protein; Transcriptional regulatory, C terminal family protein; [K] COG3710 DNA-binding winged-HTH domains.
  
     0.682
CH54_1431
Hypothetical protein.
  
     0.650
lagD
ABC transporter family protein; [V] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
  
    0.633
nrfB
cyt_nit_nrfB: cytochrome c nitrite reductase, pentaheme subunit.
  
     0.608
CH54_852
Outer membrane beta-barrel domain protein; [M] COG3637 Opacity protein and related surface antigens.
  
     0.604
CH54_3949
Autotrans_barl: outer membrane autotransporter barrel domain protein; [MU] COG3468 Type V secretory pathway, adhesin AidA.
  
   
 0.567
CH54_1915
parB-like nuclease family protein; [S] COG4318 Uncharacterized protein conserved in bacteria.
  
     0.537
yhcP_2
Aluminum activated malate transporter family protein; [S] COG1289 Predicted membrane protein.
  
     0.512
CH54_521
Bacterial regulatory s, luxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
    0.507
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
Server load: medium (46%) [HD]
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