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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abgRBacterial regulatory helix-turn-helix, lysR family protein; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (286 aa)    
Predicted Functional Partners:
rcsA
Bacterial regulatory s, luxR family protein; [K] COG2771 DNA-binding HTH domain-containing proteins.
  
    0.682
CH54_2325
Major Facilitator Superfamily protein.
  
    0.665
CH54_1454
beta/Gamma crystallin family protein.
  
     0.654
cyaB
CYTH domain protein; [F] COG1437 Adenylate cyclase, class 2 (thermophilic).
  
     0.584
hicB
Hypothetical protein; [S] COG1598 Uncharacterized conserved protein.
  
     0.548
CH54_1917
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein; [U] COG3210 Large exoproteins involved in heme utilization or adhesion.
  
    0.516
rcsB_2
Bacterial regulatory s, luxR family protein; [K] COG2771 DNA-binding HTH domain-containing proteins.
  
    0.506
CH54_507
Phage major capsid E family protein.
  
     0.477
CH54_389
terB-N family protein.
  
     0.470
CH54_346
Hypothetical protein.
  
     0.433
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.