STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sulPsulP: sulfate permease family protein; [P] COG0659 Sulfate permease and related transporters (MFS superfamily). (565 aa)    
Predicted Functional Partners:
CH54_3453
TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein; [P] COG0288 Carbonic anhydrase.
 
  
 0.814
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.704
CH54_2836
[T] COG2365 Protein tyrosine/serine phosphatase.
    
   0.691
nuoM
NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M family protein; [C] COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M).
  
 
 0.682
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.679
CH54_1659
Phosphopantetheine attachment site family protein.
    
   0.572
can
Carbonic anhydrase family protein; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
 
  
 0.512
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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