Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH54_660Hypothetical protein. (91 aa)    
Predicted Functional Partners:
cspD
cspD: cold shock domain protein CspD; [K] COG1278 Cold shock proteins.
   
    0.819
CH54_731
Hypothetical protein.
  
     0.764
CH54_3995
yejG-like family protein.
  
     0.757
ydgH
Hypothetical protein.
  
     0.751
tomB
Biofilm formation regulator YbaJ family protein.
  
     0.729
yciC
Hypothetical protein.
  
     0.725
CH54_1474
PRD domain protein; [K] COG3711 Transcriptional antiterminator.
  
     0.724
CH54_1139
cyd_oper_ybgE: cyd operon protein YbgE; [S] COG3790 Predicted membrane protein.
  
     0.723
CH54_2062
Hypothetical protein.
  
     0.723
CH54_2487
Conserved hypothetical protein; [R] COG5645 Predicted periplasmic lipoprotein.
  
     0.723
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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