STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
veshutD family protein; [S] COG3758 Uncharacterized protein conserved in bacteria. (190 aa)    
Predicted Functional Partners:
hutF
hutF: formiminoglutamate deiminase; [FR] COG0402 Cytosine deaminase and related metal-dependent hydrolases.
 
     0.930
hutG
hutG_amidohyd: N-formylglutamate deformylase; [E] COG3741 N-formylglutamate amidohydrolase.
 
     0.827
nhaA
Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
   
    0.815
hutC
His_ut_repres: histidine utilization repressor; [K] COG2188 Transcriptional regulators.
 
     0.754
hutI
hutI: imidazolonepropionase; [Q] COG1228 Imidazolonepropionase and related amidohydrolases.
 
     0.609
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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