STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narR[T] COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific. (593 aa)    
Predicted Functional Partners:
narL
Bacterial regulatory s, luxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 
 0.932
nreC_1
Bacterial regulatory s, luxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 
 0.838
uhpA_1
Bacterial regulatory s, luxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 
 0.796
uhpA_3
Bacterial regulatory s, luxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 
 0.784
rcsB_3
Bacterial regulatory s, luxR family protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions.
 
 
 0.677
bvgA
Bacterial regulatory s, luxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 
 0.672
uvrY
Bacterial regulatory s, luxR family protein; [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 
 0.621
CH54_1968
SCP-2 sterol transfer family protein; [I] COG3154 Putative lipid carrier protein.
 
     0.560
CH54_1970
Peptidase U32 family protein; [O] COG0826 Collagenase and related proteases.
  
    0.500
arcB
Sensory box protein; [T] COG0642 Signal transduction histidine kinase.
  
  
 0.493
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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