STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaF_2Acetyltransferase family protein; [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins. (235 aa)    
Predicted Functional Partners:
ttr
Acetyltransferase domain protein; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
   0.580
rnc
RNaseIII: ribonuclease III; [K] COG0571 dsRNA-specific ribonuclease.
   
    0.522
pgaC
pgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase; [M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
     
 0.447
ydaF_1
Acetyltransferase family protein; [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.
  
   
 0.444
pgaD
PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD.
       0.443
pgaB
deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB; [G] COG0726 Predicted xylanase/chitin deacetylase.
       0.443
pgaA
PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA.
  
    0.440
amiC
[M] COG0860 N-acetylmuramoyl-L-alanine amidase.
 
      0.436
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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