Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pgaDPGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD. (155 aa)    
Predicted Functional Partners:
pgaC
pgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase; [M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
 0.988
pgaB
deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB; [G] COG0726 Predicted xylanase/chitin deacetylase.
       0.796
pgaA
PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA.
       0.791
ydaF_2
Acetyltransferase family protein; [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.
       0.443
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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