STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_714Xylose isomerase-like TIM barrel family protein; [G] COG3622 Hydroxypyruvate isomerase. (259 aa)    
Predicted Functional Partners:
CH54_716
Conserved hypothetical protein; [S] COG3395 Uncharacterized protein conserved in bacteria.
 
  
 0.953
fucA_2
Hypothetical protein; Class II Aldolase and Adducin N-terminal domain protein; [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
 
  
 0.914
garR
2-hydroxy-3-oxopropionate reductase; Catalyzes the reduction of tatronate semialdehyde to D- glycerate; Belongs to the HIBADH-related family. 2-hydroxy-3- oxopropionate reductase subfamily.
  
 0.700
CH54_717
deoR-like helix-turn-helix domain protein; [KG] COG1349 Transcriptional regulators of sugar metabolism.
 
    0.549
CH54_3176
3-beta hydroxysteroid dehydrogenase/isomerase family protein; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.
 
    0.475
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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