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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_724ogr/Delta-like zinc finger family protein. (71 aa)    
Predicted Functional Partners:
CH54_2599
Phage P2 GpU family protein; [R] COG3499 Phage protein U.
   
    0.815
CH54_2619
Phage capsid scaffolding (GPO) serine peptidase family protein.
   
    0.709
CH54_2608
Lysozyme family protein; Gene 25-like; [R] COG3628 Phage baseplate assembly protein W.
   
    0.708
CH54_2626
Bacteriophage replication protein; Gene A family.
   
    0.708
CH54_2611
P2 phage tail completion R family protein.
   
    0.705
CH54_2618
major_capsid_P2: phage major capsid protein, P2 family.
   
    0.701
CH54_2610
tail_comp_S: phage virion morphogenesis protein.
   
    0.697
CH54_723
Gene D family; [R] COG3500 Phage protein D.
  
    0.666
CH54_2615
[R] COG5004 P2-like prophage tail protein X.
   
    0.659
CH54_2616
Phage head completion family protein.
   
    0.647
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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