STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
efeOImelysin family protein; [P] COG2822 Predicted periplasmic lipoprotein involved in iron transport. (374 aa)    
Predicted Functional Partners:
efeU_1
Iron permease FTR1 family protein; [P] COG0672 High-affinity Fe2+/Pb2+ permease.
  
 0.998
efeB
Dyp-type peroxidase family protein; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
 
  
 0.995
efeU_2
Iron permease FTR1 family protein; [P] COG0672 High-affinity Fe2+/Pb2+ permease.
 
  
 0.927
yfeX
Dyp_perox_fam: Dyp-type peroxidase family protein; [P] COG2837 Predicted iron-dependent peroxidase.
 
  
 0.889
tpd
Fe2+ transport family protein; [P] COG3470 Uncharacterized protein probably involved in high-affinity Fe2+ transport.
  
    0.869
CH54_3173
Isochorismatase family protein; [Q] COG1535 Isochorismate hydrolase.
   
    0.814
putP
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.459
fhuC_2
ABC transporter family protein; [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
   
  
 0.432
CH54_3172
DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase; [Q] COG1021 Peptide arylation enzymes.
   
    0.420
CH54_883
AMP-binding enzyme family protein; [Q] COG1021 Peptide arylation enzymes.
   
    0.420
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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