STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_855Tripartite ATP-independent periplasmic transporter, DctQ component family protein; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component. (168 aa)    
Predicted Functional Partners:
CH54_856
dctM: TRAP transporter, DctM subunit; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
 
 0.991
CH54_854
dctP: TRAP transporter solute receptor, DctP family protein; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.969
CH54_233
kduI/IolB family protein; [G] COG3717 5-keto 4-deoxyuronate isomerase.
 
     0.462
CH54_3050
Hypothetical protein.
  
     0.416
uxaA_2
Hypothetical protein; D-galactarate dehydratase / Altronate hydrolase, C terminus family protein; [G] COG2721 Altronate dehydratase.
 
     0.405
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.