Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CH54_877Binding--dependent transport system inner membrane component family protein; [V] COG4171 ABC-type antimicrobial peptide transport system, permease component. (250 aa)    
Predicted Functional Partners:
CH54_878
Binding--dependent transport system inner membrane component family protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
   0.980
CH54_879
Bacterial extracellular solute-binding s, 5 Middle family protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
 
   0.968
ccmA-9
ccmA: heme ABC exporter, ATP-binding protein CcmA; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
 0.959
ddpB
Binding--dependent transport system inner membrane component family protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
   0.916
gsiC
Binding--dependent transport system inner membrane component family protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
   0.914
dppB_2
Binding--dependent transport system inner membrane component family protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
   0.912
dppD
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 0.876
oppB
Binding--dependent transport system inner membrane component family protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
   0.860
gsiA_1
ABC transporter family protein; [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.
 
 
 0.850
oppD
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 0.835
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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