STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_881[K] COG2207 AraC-type DNA-binding domain-containing proteins. (317 aa)    
Predicted Functional Partners:
CH54_875
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
  
 0.642
CH54_880
tonB dependent receptor family protein; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.591
CH54_874
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
  
 0.579
CH54_888
AA-adenyl-dom: amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
   
 0.568
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.538
CH54_885
Thioesterase domain protein; [Q] COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis.
 
     0.537
dltA
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
   
 0.530
CH54_882
Salicyl_syn: salicylate synthase; [EH] COG0147 Anthranilate/para-aminobenzoate synthases component I.
     
 0.523
soxS
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.474
ccmA-9
ccmA: heme ABC exporter, ATP-binding protein CcmA; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
     0.465
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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