STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_883AMP-binding enzyme family protein; [Q] COG1021 Peptide arylation enzymes. (534 aa)    
Predicted Functional Partners:
CH54_3173
Isochorismatase family protein; [Q] COG1535 Isochorismate hydrolase.
 
 
 0.999
dltA
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
 
0.994
CH54_888
AA-adenyl-dom: amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
0.989
CH54_886
Thiaz-red: thiazolinyl imide reductase family protein; [Q] COG4693 Oxidoreductase (NAD-binding), involved in siderophore biosynthesis.
 
  
 0.977
CH54_882
Salicyl_syn: salicylate synthase; [EH] COG0147 Anthranilate/para-aminobenzoate synthases component I.
  
 0.968
CH54_885
Thioesterase domain protein; [Q] COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis.
 
  
 0.963
CH54_3163
mbtH-like family protein; [S] COG3251 Uncharacterized protein conserved in bacteria.
 
  
 0.959
CH54_3171
Isochor_syn: isochorismate synthase family protein; [HQ] COG1169 Isochorismate synthase.
 
  
 0.958
CH54_3164
AA-adenyl-dom: amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
  
0.953
CH54_891
4'-phosphopantetheinyl transferase superfamily protein; [Q] COG2977 Phosphopantetheinyl transferase component of siderophore synthetase.
 
  
 0.923
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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