STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimD_2papC N-terminal domain protein; [NU] COG3188 P pilus assembly protein, porin PapC. (880 aa)    
Predicted Functional Partners:
focC_3
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein; [NU] COG3121 P pilus assembly protein, chaperone PapD.
 
   0.970
focC_4
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein; [NU] COG3121 P pilus assembly protein, chaperone PapD.
 
 
 0.963
fim
Fimbrial family protein; [NU] COG3539 P pilus assembly protein, pilin FimA.
 
 
 0.907
focC_5
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein; [NU] COG3121 P pilus assembly protein, chaperone PapD.
 
   0.892
fimC_3
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein; [NU] COG3121 P pilus assembly protein, chaperone PapD.
 
   0.892
fimC_4
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein; [NU] COG3121 P pilus assembly protein, chaperone PapD.
 
   0.892
CH54_2446
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein; [NU] COG3121 P pilus assembly protein, chaperone PapD.
 
   0.891
papD_2
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein; [NU] COG3121 P pilus assembly protein, chaperone PapD.
 
   0.886
fimA_2
Fimbrial family protein; [NU] COG3539 P pilus assembly protein, pilin FimA.
 
 
 0.838
sfaA
[NU] COG3539 P pilus assembly protein, pilin FimA.
 
 
 0.838
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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