Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CH54_910Putative membrane protein. (534 aa)    
Predicted Functional Partners:
CH54_909
Histidine biosynthesis family protein.
       0.694
chb
Glycosyl hydrolase family 20, catalytic domain protein; [G] COG3525 N-acetyl-beta-hexosaminidase.
  
    0.654
CH54_908
HAD-SF-IIB: HAD hydrolase, IIB family protein; [R] COG0561 Predicted hydrolases of the HAD superfamily.
       0.548
fruA
FRU: PTS system, Fru family, IIB component domain protein; [G] COG1299 Phosphotransferase system, fructose-specific IIC component.
   
  
 0.469
dhaM
Dha_pts: dihydroxyacetone kinase, phosphotransfer subunit; [S] COG3412 Uncharacterized protein conserved in bacteria; Belongs to the PEP-utilizing enzyme family.
 
  
 0.440
glcR
deoR-like helix-turn-helix domain protein; [KG] COG1349 Transcriptional regulators of sugar metabolism.
       0.425
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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