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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sgrR_3Bacterial extracellular solute-binding s, 5 Middle family protein; [R] COG4533 ABC-type uncharacterized transport system, periplasmic component. (596 aa)    
Predicted Functional Partners:
appA_3
Bacterial extracellular solute-binding s, 5 Middle family protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
  
     0.543
CH54_93
Shikimate dehydrogenase substrate binding domain protein; [E] COG0169 Shikimate 5-dehydrogenase.
       0.524
ampH
Beta-lactamase family protein; [V] COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
     0.486
ycfL
Conserved hypothetical protein; [R] COG5633 Predicted periplasmic lipoprotein.
 
     0.476
thiK
ycfN_thiK: thiamine kinase; [M] COG0510 Predicted choline kinase involved in LPS biosynthesis.
 
     0.470
CH54_2805
Hypothetical protein.
  
     0.457
yceB
Hypothetical protein.
  
     0.405
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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