Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CH54_1431 | CH54_416 | CH54_1431 | CH54_416 | Hypothetical protein. | Hypothetical protein; [O] COG1076 DnaJ-domain-containing proteins 1. | 0.770 |
CH54_1431 | pduX | CH54_1431 | CH54_963 | Hypothetical protein. | GHMP kinase N terminal domain protein; [Q] COG4542 Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase. | 0.457 |
CH54_1431 | pocR | CH54_1431 | CH54_938 | Hypothetical protein. | Helix-turn-helix domain protein; [TK] COG4936 Predicted sensor domain. | 0.543 |
CH54_416 | CH54_1431 | CH54_416 | CH54_1431 | Hypothetical protein; [O] COG1076 DnaJ-domain-containing proteins 1. | Hypothetical protein. | 0.770 |
CH54_416 | pduX | CH54_416 | CH54_963 | Hypothetical protein; [O] COG1076 DnaJ-domain-containing proteins 1. | GHMP kinase N terminal domain protein; [Q] COG4542 Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase. | 0.593 |
CH54_416 | pocR | CH54_416 | CH54_938 | Hypothetical protein; [O] COG1076 DnaJ-domain-containing proteins 1. | Helix-turn-helix domain protein; [TK] COG4936 Predicted sensor domain. | 0.715 |
ddrA | ddrB | CH54_946 | CH54_947 | reactive_PduG: diol dehydratase reactivase alpha subunit. | Dehydratase medium subunit. | 0.989 |
ddrA | pddB | CH54_946 | CH54_944 | reactive_PduG: diol dehydratase reactivase alpha subunit. | [Q] COG4909 Propanediol dehydratase, large subunit. | 0.938 |
ddrA | pddC | CH54_946 | CH54_945 | reactive_PduG: diol dehydratase reactivase alpha subunit. | [Q] COG4910 Propanediol dehydratase, small subunit. | 0.938 |
ddrA | pduB | CH54_946 | CH54_942 | reactive_PduG: diol dehydratase reactivase alpha subunit. | microcomp_PduB: microcompartment protein PduB; [E] COG4816 Ethanolamine utilization protein. | 0.939 |
ddrA | pduX | CH54_946 | CH54_963 | reactive_PduG: diol dehydratase reactivase alpha subunit. | GHMP kinase N terminal domain protein; [Q] COG4542 Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase. | 0.596 |
ddrA | pocR | CH54_946 | CH54_938 | reactive_PduG: diol dehydratase reactivase alpha subunit. | Helix-turn-helix domain protein; [TK] COG4936 Predicted sensor domain. | 0.488 |
ddrA | rpoA | CH54_946 | CH54_2228 | reactive_PduG: diol dehydratase reactivase alpha subunit. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.400 |
ddrB | ddrA | CH54_947 | CH54_946 | Dehydratase medium subunit. | reactive_PduG: diol dehydratase reactivase alpha subunit. | 0.989 |
ddrB | pddB | CH54_947 | CH54_944 | Dehydratase medium subunit. | [Q] COG4909 Propanediol dehydratase, large subunit. | 0.984 |
ddrB | pddC | CH54_947 | CH54_945 | Dehydratase medium subunit. | [Q] COG4910 Propanediol dehydratase, small subunit. | 0.986 |
ddrB | pduB | CH54_947 | CH54_942 | Dehydratase medium subunit. | microcomp_PduB: microcompartment protein PduB; [E] COG4816 Ethanolamine utilization protein. | 0.944 |
ddrB | pduX | CH54_947 | CH54_963 | Dehydratase medium subunit. | GHMP kinase N terminal domain protein; [Q] COG4542 Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase. | 0.627 |
ddrB | pocR | CH54_947 | CH54_938 | Dehydratase medium subunit. | Helix-turn-helix domain protein; [TK] COG4936 Predicted sensor domain. | 0.567 |
pddB | ddrA | CH54_944 | CH54_946 | [Q] COG4909 Propanediol dehydratase, large subunit. | reactive_PduG: diol dehydratase reactivase alpha subunit. | 0.938 |
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