Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ycfLConserved hypothetical protein; [R] COG5633 Predicted periplasmic lipoprotein. (135 aa)    
Predicted Functional Partners:
CH54_94
HIT domain protein; [FGR] COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.
  
  
 0.973
lpoB
Hypothetical protein; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b). Belongs to the LpoB family.
 
  
 0.955
thiK
ycfN_thiK: thiamine kinase; [M] COG0510 Predicted choline kinase involved in LPS biosynthesis.
     
 0.830
CH54_99
Conserved hypothetical protein; [R] COG3150 Predicted esterase; Belongs to the UPF0227 family.
 
   
 0.799
tomB
Biofilm formation regulator YbaJ family protein.
  
     0.774
tus
DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.773
CH54_3995
yejG-like family protein.
  
     0.772
uspB
Universal stress B family protein.
  
     0.771
ompX
ompA-like transmembrane domain protein; [M] COG3637 Opacity protein and related surface antigens.
  
     0.763
CH54_731
Hypothetical protein.
  
     0.763
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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