STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pduMmicrocomp_PduM: microcompartment protein PduM. (165 aa)    
Predicted Functional Partners:
pduO
ATP:cob(I)alamin adenosyltransferase; pduO_Nterm: ATP:cob(I)alamin adenosyltransferase; [S] COG2096 Uncharacterized conserved protein; Belongs to the Cob(I)alamin adenosyltransferase family.
  
  
 0.869
pduN
Ethanolamine utilization EutN/carboxysome family protein; [QC] COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein.
  
  
 0.867
pddA
[Q] COG4909 Propanediol dehydratase, large subunit.
  
  
 0.855
pduL
Propanediol utilization PduL family protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
     
 0.840
pduU
BMC domain protein; [E] COG4810 Ethanolamine utilization protein.
     
 0.784
CH54_949
BMC domain protein; [QC] COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein.
     
 0.779
eutP
eutP: ethanolamine utilization protein, EutP; [E] COG4917 Ethanolamine utilization protein; Belongs to the EutP/PduV family.
     
 0.772
pduP
[C] COG1012 NAD-dependent aldehyde dehydrogenases.
     
 0.765
pduQ
Iron-containing alcohol dehydrogenase family protein; [C] COG1454 Alcohol dehydrogenase, class IV.
     
 0.753
ddrB
Dehydratase medium subunit.
  
  
 0.748
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
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