STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH54_9703-beta hydroxysteroid dehydrogenase/isomerase family protein; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases. (369 aa)    
Predicted Functional Partners:
CH54_888
AA-adenyl-dom: amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
  
 0.928
CH54_3164
AA-adenyl-dom: amino acid adenylation domain protein; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
  
 0.923
dltA
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
  
 0.917
CH54_3173
Isochorismatase family protein; [Q] COG1535 Isochorismate hydrolase.
 
  
 0.799
CH54_885
Thioesterase domain protein; [Q] COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis.
 
  
 0.658
CH54_507
Phage major capsid E family protein.
  
     0.592
CH54_3831
Hypothetical protein.
  
     0.571
CH54_1917
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein; [U] COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.559
CH54_1454
beta/Gamma crystallin family protein.
  
     0.551
tauD
Taurine catabolism dioxygenase TauD, TfdA family protein; [Q] COG2175 Probable taurine catabolism dioxygenase.
  
  
 0.547
Your Current Organism:
Yersinia kristensenii
NCBI taxonomy Id: 28152
Other names: ATCC 33638, CCUG 11294, CCUG 8241, CIP 80.30, DSM 18543, JCM 7576, NCTC 11471, Y. kristensenii, strain 105
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.