A0A2H2IV42 protein (Caenorhabditis japonica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2H2IV42

Uncharacterized protein. (121 aa)

Predicted Functional Partners:

A0A2H2HUJ8

0.981

A0A2H2IC89

0.977

A0A2H2IVQ3

0.977

A0A2H2IN65

0.976

H2VTH4_CAEJA

0.974

A0A2H2IY02

0.964

K7H9Y0_CAEJA

0.964

K7GY35_CAEJA

0.959

K7GUS7_CAEJA

0.957

A0A2H2I9U6

0.947

Your Current Organism:

Caenorhabditis japonica

NCBI taxonomy Id: 281687
Other names: C. japonica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2H2HUJ8	A0A2H2I9U6	A0A2H2HUJ8	A0A2H2I9U6	RNA_pol_L_2 domain-containing protein.	RPOLD domain-containing protein.	0.998
A0A2H2HUJ8	A0A2H2IC89	A0A2H2HUJ8	A0A2H2IC89	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
A0A2H2HUJ8	A0A2H2IN65	A0A2H2HUJ8	A0A2H2IN65	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.999
A0A2H2HUJ8	A0A2H2IV42	A0A2H2HUJ8	A0A2H2IV42	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.981
A0A2H2HUJ8	A0A2H2IVQ3	A0A2H2HUJ8	A0A2H2IVQ3	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
A0A2H2HUJ8	A0A2H2IY02	A0A2H2HUJ8	A0A2H2IY02	RNA_pol_L_2 domain-containing protein.	SHS2_Rpb7-N domain-containing protein.	0.998
A0A2H2HUJ8	H2VTH4_CAEJA	A0A2H2HUJ8	H2VTH4	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.999
A0A2H2HUJ8	K7GUS7_CAEJA	A0A2H2HUJ8	K7GUS7	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.996
A0A2H2HUJ8	K7GY35_CAEJA	A0A2H2HUJ8	K7GY35	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.999
A0A2H2HUJ8	K7H9Y0_CAEJA	A0A2H2HUJ8	K7H9Y0	RNA_pol_L_2 domain-containing protein.	S1 domain-containing protein.	0.998
A0A2H2I9U6	A0A2H2HUJ8	A0A2H2I9U6	A0A2H2HUJ8	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.998
A0A2H2I9U6	A0A2H2IC89	A0A2H2I9U6	A0A2H2IC89	RPOLD domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
A0A2H2I9U6	A0A2H2IN65	A0A2H2I9U6	A0A2H2IN65	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
A0A2H2I9U6	A0A2H2IV42	A0A2H2I9U6	A0A2H2IV42	RPOLD domain-containing protein.	Uncharacterized protein.	0.947
A0A2H2I9U6	A0A2H2IVQ3	A0A2H2I9U6	A0A2H2IVQ3	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.998
A0A2H2I9U6	A0A2H2IY02	A0A2H2I9U6	A0A2H2IY02	RPOLD domain-containing protein.	SHS2_Rpb7-N domain-containing protein.	0.990
A0A2H2I9U6	H2VTH4_CAEJA	A0A2H2I9U6	H2VTH4	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
A0A2H2I9U6	K7GUS7_CAEJA	A0A2H2I9U6	K7GUS7	RPOLD domain-containing protein.	Uncharacterized protein.	0.985
A0A2H2I9U6	K7GY35_CAEJA	A0A2H2I9U6	K7GY35	RPOLD domain-containing protein.	Uncharacterized protein.	0.998
A0A2H2I9U6	K7H9Y0_CAEJA	A0A2H2I9U6	K7H9Y0	RPOLD domain-containing protein.	S1 domain-containing protein.	0.990