A0A2H2JDP8 protein (Caenorhabditis japonica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2H2JDP8

Uncharacterized protein. (304 aa)

Predicted Functional Partners:

A0A2H2ICL6

0.761

A0A2H2I1V0

0.752

A0A2H2JB54

0.752

A0A2H2I8V2

0.748

K7GUB9_CAEJA

0.748

H2VTX5_CAEJA

0.742

A0A2H2I5V0

0.689

K7H1L0_CAEJA

0.655

K7GV80_CAEJA

0.647

A0A2H2IH69

0.641

Your Current Organism:

Caenorhabditis japonica

NCBI taxonomy Id: 281687
Other names: C. japonica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2H2I1V0	A0A2H2I5V0	A0A2H2I1V0	A0A2H2I5V0	Uncharacterized protein.	Uncharacterized protein.	0.610
A0A2H2I1V0	A0A2H2I8V2	A0A2H2I1V0	A0A2H2I8V2	Uncharacterized protein.	Uncharacterized protein.	0.887
A0A2H2I1V0	A0A2H2IH69	A0A2H2I1V0	A0A2H2IH69	Uncharacterized protein.	Uncharacterized protein.	0.950
A0A2H2I1V0	A0A2H2JB54	A0A2H2I1V0	A0A2H2JB54	Uncharacterized protein.	Uncharacterized protein.	0.446
A0A2H2I1V0	A0A2H2JDP8	A0A2H2I1V0	A0A2H2JDP8	Uncharacterized protein.	Uncharacterized protein.	0.752
A0A2H2I1V0	H2VTX5_CAEJA	A0A2H2I1V0	H2VTX5	Uncharacterized protein.	PDZ domain-containing protein.	0.467
A0A2H2I1V0	K7GUB9_CAEJA	A0A2H2I1V0	K7GUB9	Uncharacterized protein.	Uncharacterized protein.	0.610
A0A2H2I1V0	K7GV80_CAEJA	A0A2H2I1V0	K7GV80	Uncharacterized protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.604
A0A2H2I5V0	A0A2H2I1V0	A0A2H2I5V0	A0A2H2I1V0	Uncharacterized protein.	Uncharacterized protein.	0.610
A0A2H2I5V0	A0A2H2I8V2	A0A2H2I5V0	A0A2H2I8V2	Uncharacterized protein.	Uncharacterized protein.	0.725
A0A2H2I5V0	A0A2H2IH69	A0A2H2I5V0	A0A2H2IH69	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A2H2I5V0	A0A2H2JB54	A0A2H2I5V0	A0A2H2JB54	Uncharacterized protein.	Uncharacterized protein.	0.610
A0A2H2I5V0	A0A2H2JDP8	A0A2H2I5V0	A0A2H2JDP8	Uncharacterized protein.	Uncharacterized protein.	0.689
A0A2H2I5V0	H2VTX5_CAEJA	A0A2H2I5V0	H2VTX5	Uncharacterized protein.	PDZ domain-containing protein.	0.610
A0A2H2I5V0	K7GUB9_CAEJA	A0A2H2I5V0	K7GUB9	Uncharacterized protein.	Uncharacterized protein.	0.743
A0A2H2I8V2	A0A2H2I1V0	A0A2H2I8V2	A0A2H2I1V0	Uncharacterized protein.	Uncharacterized protein.	0.887
A0A2H2I8V2	A0A2H2I5V0	A0A2H2I8V2	A0A2H2I5V0	Uncharacterized protein.	Uncharacterized protein.	0.725
A0A2H2I8V2	A0A2H2JB54	A0A2H2I8V2	A0A2H2JB54	Uncharacterized protein.	Uncharacterized protein.	0.887
A0A2H2I8V2	A0A2H2JDP8	A0A2H2I8V2	A0A2H2JDP8	Uncharacterized protein.	Uncharacterized protein.	0.748
A0A2H2I8V2	H2VTX5_CAEJA	A0A2H2I8V2	H2VTX5	Uncharacterized protein.	PDZ domain-containing protein.	0.887