A0A2H2JGH8 protein (Caenorhabditis japonica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2H2JGH8

Uncharacterized protein. (406 aa)

Predicted Functional Partners:

A0A2H2HWY7

0.553

A0A2H2IZ32

0.553

K7GTZ1_CAEJA

0.515

A0A2H2I6F9

0.504

A0A2H2IIA5

0.499

A0A2H2IJV6

0.499

A0A2H2IH19

0.497

A0A2H2ICL6

0.491

A0A2Q4R1V0

0.485

H2WHF6_CAEJA

0.483

Your Current Organism:

Caenorhabditis japonica

NCBI taxonomy Id: 281687
Other names: C. japonica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2H2HWY7	A0A2H2ICL6	A0A2H2HWY7	A0A2H2ICL6	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.774
A0A2H2HWY7	A0A2H2IH19	A0A2H2HWY7	A0A2H2IH19	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like domain-containing protein.	0.999
A0A2H2HWY7	A0A2H2IIA5	A0A2H2HWY7	A0A2H2IIA5	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	MPN domain-containing protein.	0.995
A0A2H2HWY7	A0A2H2IJV6	A0A2H2HWY7	A0A2H2IJV6	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	MPN domain-containing protein.	0.995
A0A2H2HWY7	A0A2H2IZ32	A0A2H2HWY7	A0A2H2IZ32	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like domain-containing protein.	0.999
A0A2H2HWY7	A0A2H2JGH8	A0A2H2HWY7	A0A2H2JGH8	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.553
A0A2H2HWY7	A0A2Q4R1V0	A0A2H2HWY7	A0A2Q4R1V0	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.999
A0A2H2HWY7	H2WHF6_CAEJA	A0A2H2HWY7	H2WHF6	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal_L2_C domain-containing protein.	0.999
A0A2H2HWY7	K7GTZ1_CAEJA	A0A2H2HWY7	K7GTZ1	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.999
A0A2H2I6F9	A0A2H2JGH8	A0A2H2I6F9	A0A2H2JGH8	Uncharacterized protein.	Uncharacterized protein.	0.504
A0A2H2ICL6	A0A2H2HWY7	A0A2H2ICL6	A0A2H2HWY7	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.774
A0A2H2ICL6	A0A2H2IH19	A0A2H2ICL6	A0A2H2IH19	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Ubiquitin-like domain-containing protein.	0.673
A0A2H2ICL6	A0A2H2IIA5	A0A2H2ICL6	A0A2H2IIA5	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	MPN domain-containing protein.	0.655
A0A2H2ICL6	A0A2H2IJV6	A0A2H2ICL6	A0A2H2IJV6	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	MPN domain-containing protein.	0.655
A0A2H2ICL6	A0A2H2IZ32	A0A2H2ICL6	A0A2H2IZ32	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Ubiquitin-like domain-containing protein.	0.774
A0A2H2ICL6	A0A2H2JGH8	A0A2H2ICL6	A0A2H2JGH8	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.491
A0A2H2IH19	A0A2H2HWY7	A0A2H2IH19	A0A2H2HWY7	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
A0A2H2IH19	A0A2H2ICL6	A0A2H2IH19	A0A2H2ICL6	Ubiquitin-like domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.673
A0A2H2IH19	A0A2H2IIA5	A0A2H2IH19	A0A2H2IIA5	Ubiquitin-like domain-containing protein.	MPN domain-containing protein.	0.989
A0A2H2IH19	A0A2H2IJV6	A0A2H2IH19	A0A2H2IJV6	Ubiquitin-like domain-containing protein.	MPN domain-containing protein.	0.986