STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCO56512.1Putative TRAP-type C4-dicarboxylate transport system, small permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (174 aa)    
Predicted Functional Partners:
CCO56511.1
Putative TRAP-type C4-dicarboxylate transport system, large permease component DctM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.942
CCO56510.1
Putative TRAP-type C4-dicarboxylate transport system, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.939
CCO58787.1
Putative TRAP-type transport system, small permease component, N-acetylneuraminate transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.759
CCO61773.1
Putative TRAP-type C4-dicarboxylate transport system, small permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.700
CCO61749.1
Putative TRAP-type C4-dicarboxylate transport system, small permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.697
CCO60216.1
Putative TRAP-type C4-dicarboxylate transport system, small permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.660
CCO60215.1
Putative TRAP-type C4-dicarboxylate transport system, large permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.631
CCO58497.1
Putative TRAP-type C4-dicarboxylate transport system, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.605
CCO57344.1
Putative TRAP-type C4-dicarboxylate transport system, small permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.599
CCO61772.1
Putative TRAP-type C4-dicarboxylate transport system, large permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.595
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
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