STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbB2Biopolymer transport protein ExbB2; Function experimentally demonstrated in the studied genus; transporter. (181 aa)    
Predicted Functional Partners:
exbD2
Biopolymer transport protein exbD2; Function experimentally demonstrated in the studied genus; transporter.
 
 
 0.988
tonB
TonB2; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.985
CCO56586.1
Putative TonB system biopolymer transport component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.952
CCO56591.1
Putative TPR domain protein component of TonB system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.918
CCO56587.1
Putative Outer membrane stability protein, TolR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    
0.851
tolR
TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.797
exbD
Biopolymer transport protein exbD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.797
CCO59825.1
Putative Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.772
CCO56592.1
Putative Tautomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.566
CCO61460.1
Putative TonB-dependent haemoglobin/transferrin/lactoferrin receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
  
 0.514
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.