STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCO57246.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (514 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
   
    0.894
CCO61487.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.666
CCO57214.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.549
CCO60960.1
Putative Lipase (class 3); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.530
CCO57312.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.510
CCO56698.1
Putative Transcription regulator, TetR-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.495
pflB
Formate acetyltransferase 1; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.492
CCO59518.1
Homologs of previously reported genes of unknown function.
  
     0.486
CCO60306.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.457
CCO60799.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.457
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.