STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCO57478.1Putative TRAP-type C4-dicarboxylate transport system, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (350 aa)    
Predicted Functional Partners:
CCO57480.1
Putative TRAP-type C4-dicarboxylate transport system, small permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.908
CCO57479.1
Putative TRAP-type C4-dicarboxylate transport system, large permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.907
CCO57481.1
Putative Transcriptional regulator, RpiR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
     0.847
CCO57476.1
Putative SUCCINATE SEMIALDEHYDE DEHYDROGENASE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the aldehyde dehydrogenase family.
 
     0.797
CCO57475.1
Putative Alcohol dehydrogenase, class IV; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.774
CCO57477.1
Putative Glutamine synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the glutamine synthetase family.
 
     0.669
CCO57474.1
Putative GMP synthase-Glutamine amidotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.548
CCO61144.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.445
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.