STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCO57773.1Putative Type IIA topoisomerase, B subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (114 aa)    
Predicted Functional Partners:
CCO56923.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.796
CCO57769.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.772
CCO58399.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.756
CCO57779.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.755
CCO56689.1
Putative Type IV pilus assembly PilZ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
  
     0.748
CCO60915.1
Putative Late competence development protein ComFB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
  
     0.746
CCO57010.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.742
CCO59145.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.728
CCO59020.1
Putative MSHA biogenesis protein MshP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.724
CCO58538.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.721
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.