STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCO59588.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (142 aa)    
Predicted Functional Partners:
CCO59589.1
Putative 5-carboxymethyl-2-hydroxymuconate delta-isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.770
CCO57240.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0304 family.
  
     0.756
CCO59374.1
Putative AsmA protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.750
CCO58335.1
Putative Cyd operon protein YbgE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.744
uspB
Universal stress protein B; Function of homologous gene experimentally demonstrated in an other organism; cell process.
  
     0.707
CCO56782.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0253 family.
  
     0.692
matP
Conserved hypothetical protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
     0.667
CCO56687.1
Putative Virulence factor, haemolysin regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
     0.663
CCO57264.1
Putative DNA transformation protein TfoX; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
     0.646
CCO59345.1
Putative ATPase of the AAA+ class; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.646
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.