STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfeAPeriplasmic chelated iron-binding protein yfeA; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the bacterial solute-binding protein 9 family. (293 aa)    
Predicted Functional Partners:
yfeB
Chelated iron transport system membrane protein yfeB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.997
yfeD
Chelated iron transport system membrane protein yfeD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.997
yfeC
Chelated iron transport system membrane protein yfeC; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.996
znuB
High-affinity zinc uptake system membrane protein znuB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 0.866
znuC
Zinc import ATP-binding protein znuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
  
 0.703
CCO56808.1
Putative ABC-type Mn2+/Zn2+ transport systems, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.625
CCO60074.1
Putative Cobalamin (vitamin B12) biosynthesis CobW-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.552
CCO58609.1
Putative High-affinity zinc uptake system protein znuA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
 0.550
rpsN
30S ribosomal subunit protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.538
rpmB
50S ribosomal subunit protein L28; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.532
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.