STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
CCO60005.1Putative Inner membrane protein CreD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component. (461 aa)    
Predicted Functional Partners:
creC
Sensor protein creC; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
   
 0.916
rtcB
Fragment of RNA 3'-terminal phosphate cyclase (part 1); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.627
blrA
Beta-lactamase response regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator.
     
 0.622
CCO59601.1
Putative Large extracellular alpha-helical protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; 21888978, 20105438.
  
     0.618
CCO58441.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.539
CCO59602.1
Putative Penicillin-binding protein 1C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
  
     0.520
CCO61195.1
Putative Protease Inhibitor Ecotin domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.513
rtcR
Transcriptional regulatory protein rtcR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
     0.457
CCO57937.1
Putative nucleotidyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.444
CCO58045.1
Putative von Willebrand factor, type A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
     0.439
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
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