STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCO60065.1Putative Integral outer membrane protein TolC, efflux pump component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (468 aa)    
Predicted Functional Partners:
CCO60066.1
Putative copper/silver efflux system membrane fusion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.988
cusA
Copper/silver efflux system, membrane component; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.952
CCO60068.1
Putative Cupredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
 
   
 0.720
CCO59724.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.676
CCO58941.1
Putative HlyD-like secretion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.665
CCO61110.1
Putative Secretion protein HlyD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.657
CCO60064.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.639
CCO60805.1
Putative DsbA thiol disulfide oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   
 0.588
CCO56710.1
Putative HlyD-like secretion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.585
CCO57949.1
Putative RND family of transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.585
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
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