STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCO60080.1Putative Peptidase S8 and S53, subtilisin, kexin, sedolisin family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the peptidase S8 family. (566 aa)    
Predicted Functional Partners:
CCO58245.1
Putative Zinc-dependent metalloprotease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.613
CCO59534.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
   0.527
CCO56253.1
Putative SERINE-TYPE PROTEASE INHIBITOR-RELATED; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
   
 
 0.510
CCO60473.1
Putative Alpha-tubulin suppressor and related RCC1 domain-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 
 0.510
CCO60533.1
Putative cAMP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.505
CCO56956.1
Hypothetical protein; No homology to any previously reported sequences.
 
 
 0.428
secY
Preprotein translocase subunit secY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.428
ftsK
DNA translocase ftsK; Function experimentally demonstrated in the studied genus; enzyme.
  
 
 0.419
CCO57586.1
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.414
CCO61384.1
Putative SURF1 superfamily protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
    
   0.414
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.