STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCO60575.1Putative Transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (267 aa)    
Predicted Functional Partners:
CCO58042.1
Putative AraC-type DNA-binding domain-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.688
CCO59979.1
Putative AraC-type DNA-binding domain-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.669
CCO57966.1
Putative Transcriptional regulator, AraC family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.658
CCO60098.1
Putative Transcriptional regulator, AraC family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.625
CCO59862.1
Putative ARAC FAMILY TRANSCRIPTIONAL REGULATORY PROTEIN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.617
CCO60469.1
Putative Transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.616
CCO61266.1
Putative AraC-type DNA-binding domain-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.605
CCO61647.1
Putative transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.603
CCO60576.1
Putative LysE type translocator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.601
CCO61529.1
Putative Transcriptional Regulator, AraC family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
 
 0.598
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
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