STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ravAATPase ravA; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (552 aa)    
Predicted Functional Partners:
CCO60701.1
Putative von Willebrand factor type A (vWA) domain containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
  
 0.963
crl
Putative Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.671
CCO59345.1
Putative ATPase of the AAA+ class; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.598
CCO56312.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.566
CCO58203.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.523
CCO59125.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.518
CCO59254.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.511
CCO56829.1
Putative alpha/beta-Hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the UPF0255 family.
  
     0.510
CCO60699.1
Putative ADP-ribose diphosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.504
CCO61370.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.494
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
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