STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCO60747.1Putative TRAP-type C4-dicarboxylate transport system, small permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (183 aa)    
Predicted Functional Partners:
CCO60746.1
Putative TRAP-type C4-dicarboxylate transport system, large permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 0.946
CCO60748.1
Putative TRAP-type C4-dicarboxylate transport system, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.909
CCO57871.1
Putative TRAP-type C4-dicarboxylate transport system, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.796
CCO57873.1
Putative TRAP-type C4-dicarboxylate transport system, large permease component DctM subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 0.758
gnd
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
       0.660
idnK
Thermosensitive gluconokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.660
CCO61572.1
Putative TRAP-type C4-dicarboxylate transport system, small permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.623
CCO61571.1
Putative TRAP-type C4-dicarboxylate transport system, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.554
CCO60285.1
Putative Trap-type c4-dicarboxylate transport system, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.463
gntR
HTH-type transcriptional regulator gntR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.429
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.