STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCO60884.1Hypothetical protein; No homology to any previously reported sequences. (52 aa)    
Predicted Functional Partners:
CCO60885.1
Putative GLYCEROL-3-PHOSPHATE TRANSPORTER (HEXOSE TRANSPORTER); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.671
CCO60881.1
Putative Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.546
CCO60882.1
Putative TWO COMPONENT HISTIDINE KINASE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.546
CCO60883.1
Putative ABC-type Fe3+ transport system, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.546
pykA-2
Pyruvate kinase II; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the pyruvate kinase family.
       0.489
trxC
Thioredoxin-2; Function of homologous gene experimentally demonstrated in an other organism; carrier.
       0.473
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
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