Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCO60999.1Putative PAS/PAC domain-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (147 aa)    
Predicted Functional Partners:
CCO61000.1
Putative Signal receiver domain fused with Chemotaxis protein CheC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
    0.970
CCO56921.1
Putative Methyl-accepting chemotaxis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
    0.770
CCO58704.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.729
CCO59022.1
Putative MSHA pilin protein MshD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.692
CCO59858.1
Putative Serine phosphatase RsbU, regulator of sigma subunit fused with Signal receiver domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
  
 0.682
CCO57771.1
Putative Chemotaxis protein CheC--inhibitor of MCP methylation; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
    0.681
CCO59033.1
Putative MSHA biogenesis protein MshJ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.678
CCO58698.1
Putative CheY/CheW hybrid protein CheV; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
    0.675
CCO60873.1
Putative DNA-J related protein chaperone; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
 
   0.674
CCO59204.1
Putative WD-40 repeat-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.665
Your Current Organism:
Vibrio nigripulchritudo
NCBI taxonomy Id: 28173
Other names: ATCC 27043, Beneckea nigrapulchrituda, Beneckea nigripulchritudo, CAIM 323, CCUG 28586, CIP 103195, LMG 3896, LMG:3896, V. nigripulchritudo
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