Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF66_0147Conserved conserved hypothetical protein. (192 aa)    
Predicted Functional Partners:
CF66_0146
Oligoendopeptidase F.
 
     0.806
CF66_0158
Lipopolysaccharide synthesis protein.
 
     0.749
CF66_3006
Hypothetical protein.
  
     0.689
luxR
Transcriptional regulator.
  
     0.629
epsH
General secretion pathway protein H.
  
     0.590
wcaJ
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
       0.588
CF66_0149
Glycotransferase.
       0.584
CF66_0150
Glycosyltransferase.
       0.584
CF66_2281
Hypothetical protein.
  
     0.496
epsN
General secretion pathway protein N.
  
     0.476
Your Current Organism:
Photodesmus katoptron
NCBI taxonomy Id: 28176
Other names: Anomalops katoptron symbiont, C. Photodesmus katoptron, Candidatus Photodesmus katoptron
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