Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
exoTSuccinoglycan biosynthesis transport protein. (479 aa)    
Predicted Functional Partners:
CF66_0158
Lipopolysaccharide synthesis protein.
 
 
  0.974
exoQ
Exopolysaccharide production protein.
 
  
 0.968
ispD
Glycosyltransferase.
 
 
  0.950
CF66_0153
Putative glycosyltransferase.
 
 
  0.943
CF66_0159
Glycosyltransferase.
 
 
  0.937
CF66_0151
Chain length determinant protein.
 
  
 0.928
CF66_0149
Glycotransferase.
 
  
 0.882
CF66_0150
Glycosyltransferase.
 
 
  0.862
CF66_0163
Polysaccharide export protein.
 
  
 0.850
CF66_0162
Chromosome partitioning ATPase.
 
  
 0.845
Your Current Organism:
Photodesmus katoptron
NCBI taxonomy Id: 28176
Other names: Anomalops katoptron symbiont, C. Photodesmus katoptron, Candidatus Photodesmus katoptron
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