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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF66_0158Lipopolysaccharide synthesis protein. (399 aa)    
Predicted Functional Partners:
exoT
Succinoglycan biosynthesis transport protein.
 
 
  0.962
CF66_0159
Glycosyltransferase.
 
     0.890
exoQ
Exopolysaccharide production protein.
  
 
  0.842
CF66_3006
Hypothetical protein.
  
     0.774
thiK
Thiamine kinase.
  
     0.761
CF66_0147
Conserved conserved hypothetical protein.
 
    0.749
luxR
Transcriptional regulator.
  
     0.748
CF66_2387
Hypothetical protein.
  
  
  0.726
flgT
Flagellar protein.
  
     0.712
CF66_0151
Chain length determinant protein.
 
 
  0.705
Your Current Organism:
Photodesmus katoptron
NCBI taxonomy Id: 28176
Other names: Anomalops katoptron symbiont, C. Photodesmus katoptron, Candidatus Photodesmus katoptron
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.