STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF66_0163Polysaccharide export protein. (686 aa)    
Predicted Functional Partners:
CF66_0162
Chromosome partitioning ATPase.
 
 0.993
CF66_0151
Chain length determinant protein.
 
 0.992
spoIIAA
Anti-sigma F factor regulatory protein.
 
     0.935
ispD
Glycosyltransferase.
 
 
 0.903
wcaJ
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
 
 
 0.886
CF66_0153
Putative glycosyltransferase.
 
 
  0.850
exoT
Succinoglycan biosynthesis transport protein.
 
  
 0.850
exoQ
Exopolysaccharide production protein.
 
 
 0.847
paI
Peptidoglycan-associated lipoprotein.
 
   0.816
CF66_0149
Glycotransferase.
 
   
 0.810
Your Current Organism:
Photodesmus katoptron
NCBI taxonomy Id: 28176
Other names: Anomalops katoptron symbiont, C. Photodesmus katoptron, Candidatus Photodesmus katoptron
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.