paI protein (Photodesmus katoptron) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

paI

Peptidoglycan-associated lipoprotein. (278 aa)

Predicted Functional Partners:

CF66_0163

0.816

CF66_0162

0.771

spoIIAA

0.743

flgE

0.720

flgC

0.626

tolB

0.619

lolC

0.613

flgG

0.601

tolR

0.600

guaA

0.587

Your Current Organism:

Photodesmus katoptron

NCBI taxonomy Id: 28176
Other names: Anomalops katoptron symbiont, C. Photodesmus katoptron, Candidatus Photodesmus katoptron

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CF66_0162	CF66_0163	CF66_0162	CF66_0163	Chromosome partitioning ATPase.	Polysaccharide export protein.	0.993
CF66_0162	guaA	CF66_0162	CF66_9008	Chromosome partitioning ATPase.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.536
CF66_0162	paI	CF66_0162	CF66_0165	Chromosome partitioning ATPase.	Peptidoglycan-associated lipoprotein.	0.771
CF66_0162	spoIIAA	CF66_0162	CF66_0166	Chromosome partitioning ATPase.	Anti-sigma F factor regulatory protein.	0.925
CF66_0163	CF66_0162	CF66_0163	CF66_0162	Polysaccharide export protein.	Chromosome partitioning ATPase.	0.993
CF66_0163	paI	CF66_0163	CF66_0165	Polysaccharide export protein.	Peptidoglycan-associated lipoprotein.	0.816
CF66_0163	spoIIAA	CF66_0163	CF66_0166	Polysaccharide export protein.	Anti-sigma F factor regulatory protein.	0.935
flgC	flgE	CF66_4031	CF66_4033	Flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.	Flagellar hook protein flgE.	0.999
flgC	flgG	CF66_4031	CF66_4035	Flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.	Flagellar basal-body rod protein flgG; Belongs to the flagella basal body rod proteins family.	0.999
flgC	paI	CF66_4031	CF66_0165	Flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.	Peptidoglycan-associated lipoprotein.	0.626
flgC	spoIIAA	CF66_4031	CF66_0166	Flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.	Anti-sigma F factor regulatory protein.	0.486
flgE	flgC	CF66_4033	CF66_4031	Flagellar hook protein flgE.	Flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.	0.999
flgE	flgG	CF66_4033	CF66_4035	Flagellar hook protein flgE.	Flagellar basal-body rod protein flgG; Belongs to the flagella basal body rod proteins family.	0.999
flgE	paI	CF66_4033	CF66_0165	Flagellar hook protein flgE.	Peptidoglycan-associated lipoprotein.	0.720
flgE	spoIIAA	CF66_4033	CF66_0166	Flagellar hook protein flgE.	Anti-sigma F factor regulatory protein.	0.916
flgG	flgC	CF66_4035	CF66_4031	Flagellar basal-body rod protein flgG; Belongs to the flagella basal body rod proteins family.	Flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.	0.999
flgG	flgE	CF66_4035	CF66_4033	Flagellar basal-body rod protein flgG; Belongs to the flagella basal body rod proteins family.	Flagellar hook protein flgE.	0.999
flgG	paI	CF66_4035	CF66_0165	Flagellar basal-body rod protein flgG; Belongs to the flagella basal body rod proteins family.	Peptidoglycan-associated lipoprotein.	0.601
guaA	CF66_0162	CF66_9008	CF66_0162	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Chromosome partitioning ATPase.	0.536
guaA	paI	CF66_9008	CF66_0165	GMP synthase; Catalyzes the synthesis of GMP from XMP.	Peptidoglycan-associated lipoprotein.	0.587