rng protein (Photodesmus katoptron) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rng

Ribonuclease G. (489 aa)

Predicted Functional Partners:

pnp

0.901

eno

0.867

deaD

0.823

CF66_2229

0.786

CF66_2230

0.688

topA

0.588

mreD

0.559

mreC

0.483

birA

0.470

CF66_2423

0.441

Your Current Organism:

Photodesmus katoptron

NCBI taxonomy Id: 28176
Other names: Anomalops katoptron symbiont, C. Photodesmus katoptron, Candidatus Photodesmus katoptron

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CF66_2229	CF66_2230	CF66_2229	CF66_2230	Hypothetical protein.	Zn-dependent protease.	0.700
CF66_2229	mreC	CF66_2229	CF66_2226	Hypothetical protein.	Rod shape-determining protein; Involved in formation and maintenance of cell shape.	0.477
CF66_2229	mreD	CF66_2229	CF66_2227	Hypothetical protein.	Rod shape-determining protein; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.	0.645
CF66_2229	rng	CF66_2229	CF66_2228	Hypothetical protein.	Ribonuclease G.	0.786
CF66_2230	CF66_2229	CF66_2230	CF66_2229	Zn-dependent protease.	Hypothetical protein.	0.700
CF66_2230	mreC	CF66_2230	CF66_2226	Zn-dependent protease.	Rod shape-determining protein; Involved in formation and maintenance of cell shape.	0.435
CF66_2230	mreD	CF66_2230	CF66_2227	Zn-dependent protease.	Rod shape-determining protein; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.	0.495
CF66_2230	rng	CF66_2230	CF66_2228	Zn-dependent protease.	Ribonuclease G.	0.688
CF66_2423	rng	CF66_2423	CF66_2228	Signaling protein.	Ribonuclease G.	0.441
birA	eno	CF66_2125	CF66_9033	Bifunctional protein.	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.	0.457
birA	rng	CF66_2125	CF66_2228	Bifunctional protein.	Ribonuclease G.	0.470
deaD	eno	CF66_2373	CF66_9033	Cold-shock protein; Belongs to the DEAD box helicase family.	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.	0.682
deaD	pnp	CF66_2373	CF66_2252	Cold-shock protein; Belongs to the DEAD box helicase family.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.977
deaD	rng	CF66_2373	CF66_2228	Cold-shock protein; Belongs to the DEAD box helicase family.	Ribonuclease G.	0.823
deaD	topA	CF66_2373	CF66_0170	Cold-shock protein; Belongs to the DEAD box helicase family.	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.710
eno	birA	CF66_9033	CF66_2125	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.	Bifunctional protein.	0.457
eno	deaD	CF66_9033	CF66_2373	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.	Cold-shock protein; Belongs to the DEAD box helicase family.	0.682
eno	pnp	CF66_9033	CF66_2252	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.861
eno	rng	CF66_9033	CF66_2228	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.	Ribonuclease G.	0.867
eno	topA	CF66_9033	CF66_0170	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.459