Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vacJPhospholipid-binding lipoprotein. (244 aa)    
Predicted Functional Partners:
mlaC
Phospholipid ABC transporter protein.
 
 
 
 0.913
mlaD
Phospholipid ABC transporter-binding protein.
 
   
 0.877
ompH
Porin-like protein H.
   
 
 0.866
ccmF
Cytochrome c-type biogenesis protein F.
     
 0.755
ccmD
Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
     
 0.721
iptD
LPS-assembly protein lptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
  
 0.718
ccmE
Cytochrome c-type biogenesis protein E; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
       0.716
dsbE
Thiol:disulfide interchange protein.
       0.716
ccmL
Cytochrome c-type biogenesis protein L; Possible subunit of a heme lyase.
       0.716
ccmH
Cytochrome c-type biogenesis protein H.
       0.716
Your Current Organism:
Photodesmus katoptron
NCBI taxonomy Id: 28176
Other names: Anomalops katoptron symbiont, C. Photodesmus katoptron, Candidatus Photodesmus katoptron
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