Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF66_2356Hypothetical protein. (255 aa)    
Predicted Functional Partners:
CF66_9084
Hypothetical protein.
  
   
 0.776
fliJ
Flagellar protein.
  
     0.774
CF66_2142
Hypothetical protein.
  
     0.774
CF66_2265
DNA repair ATPase.
  
     0.774
motX
sSodium-type polar flagellar protein motX.
  
     0.774
rim
Ribosomal protein S12 methylthiotransferase Rim.
  
     0.772
tolA
Protein tolA.
  
     0.771
flgO
Flagellar protein.
  
     0.771
ycnJ
Copper transport protein.
  
     0.770
flgT
Flagellar protein.
  
     0.770
Your Current Organism:
Photodesmus katoptron
NCBI taxonomy Id: 28176
Other names: Anomalops katoptron symbiont, C. Photodesmus katoptron, Candidatus Photodesmus katoptron
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