deaD protein (Photodesmus katoptron) - STRING interaction network

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Score

deaD

Cold-shock protein; Belongs to the DEAD box helicase family. (586 aa)

Predicted Functional Partners:

pnp

0.972

hrpA

0.956

rpsA

0.918

rplC

0.902

rpsD

0.879

rplD

0.871

rpsE

0.868

rbgA

0.864

rplX

0.846

rplM

0.842

Your Current Organism:

Photodesmus katoptron

NCBI taxonomy Id: 28176
Other names: Anomalops katoptron symbiont, C. Photodesmus katoptron, Candidatus Photodesmus katoptron

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
deaD	hrpA	CF66_2373	CF66_5013	Cold-shock protein; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase hrpA.	0.956
deaD	pnp	CF66_2373	CF66_2252	Cold-shock protein; Belongs to the DEAD box helicase family.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.972
deaD	rbgA	CF66_2373	CF66_2364	Cold-shock protein; Belongs to the DEAD box helicase family.	Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.864
deaD	rplC	CF66_2373	CF66_7074	Cold-shock protein; Belongs to the DEAD box helicase family.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.902
deaD	rplD	CF66_2373	CF66_7073	Cold-shock protein; Belongs to the DEAD box helicase family.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.871
deaD	rplM	CF66_2373	CF66_2181	Cold-shock protein; Belongs to the DEAD box helicase family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.842
deaD	rplX	CF66_2373	CF66_7062	Cold-shock protein; Belongs to the DEAD box helicase family.	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.846
deaD	rpsA	CF66_2373	CF66_2351	Cold-shock protein; Belongs to the DEAD box helicase family.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.918
deaD	rpsD	CF66_2373	CF66_7049	Cold-shock protein; Belongs to the DEAD box helicase family.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.879
deaD	rpsE	CF66_2373	CF66_7056	Cold-shock protein; Belongs to the DEAD box helicase family.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.868
hrpA	deaD	CF66_5013	CF66_2373	ATP-dependent RNA helicase hrpA.	Cold-shock protein; Belongs to the DEAD box helicase family.	0.956
hrpA	rplC	CF66_5013	CF66_7074	ATP-dependent RNA helicase hrpA.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.784
hrpA	rplD	CF66_5013	CF66_7073	ATP-dependent RNA helicase hrpA.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.808
hrpA	rplM	CF66_5013	CF66_2181	ATP-dependent RNA helicase hrpA.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.696
hrpA	rplX	CF66_5013	CF66_7062	ATP-dependent RNA helicase hrpA.	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.764
hrpA	rpsA	CF66_5013	CF66_2351	ATP-dependent RNA helicase hrpA.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.917
hrpA	rpsD	CF66_5013	CF66_7049	ATP-dependent RNA helicase hrpA.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.948
hrpA	rpsE	CF66_5013	CF66_7056	ATP-dependent RNA helicase hrpA.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.950
pnp	deaD	CF66_2252	CF66_2373	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Cold-shock protein; Belongs to the DEAD box helicase family.	0.972
pnp	rplC	CF66_2252	CF66_7074	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.893