Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF66_2401Hypothetical protein. (161 aa)    
Predicted Functional Partners:
ccoS
Cytochrome c oxidase maturation protein.
 
   
 0.928
ccoP2
Cbb3-type cytochrome c oxidase subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
    0.881
braZ
Branched-chain amino acid transport system 3 carrier protein.
 
     0.821
ccoN
Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.820
ccoO
Cytochrome c oxidase subunit.
 
    0.819
ccoI
Cytochrome c oxidase biogenesis protein.
 
    0.747
CF66_2142
Hypothetical protein.
  
     0.674
CF66_2356
Hypothetical protein.
  
     0.670
ccoQ
Cytochrome c oxidase.
       0.666
tolA
Protein tolA.
  
     0.655
Your Current Organism:
Photodesmus katoptron
NCBI taxonomy Id: 28176
Other names: Anomalops katoptron symbiont, C. Photodesmus katoptron, Candidatus Photodesmus katoptron
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